PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015936.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family BBR-BPC
Protein Properties Length: 312aa    MW: 34269.3 Da    PI: 10.1531
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015936.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind334.13.7e-10212851300
             GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssia.erdaki....rernlalsekkaav...aerd.........maflqrdkalaernk 72 
                           mddd+ + rn+gyyep+  +k +lglqlmss+a +rd+k     r+  + + ++++++   ++rd         m++  rd+++++   
  HL.SW.v1.0.G015936.1   1 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSMAeQRDTKAflpgRDPTTVMVSSNGTFhtnHPRDcvvsdapvpMNY-VRDSWVNQ--- 83 
                           9***9999*******99..**************78999999***999998999998884445666************.9*******... PP

             GAGA_bind  73 alverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161
                                ++k+l++l+ +++        ++vl++t+ ++slq+     l+++ +  r  ++  +  iee + +++  ++kk++  +  pk+
  HL.SW.v1.0.G015936.1  84 -----RDKFLNMLPPNTN--------YGVLPETSGAHSLQM-----LQPPEAAPR--DERVVGRIEEPVVNKESGPSKKRQGGGGAPKA 152
                           .....789******8886........9**************.....555444433..33456667776666666666666667788999 PP

             GAGA_bind 162 kkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkr 250
                           +k kk++k    +k++++++    r+k  kks+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++SvyPLP+stkr
  HL.SW.v1.0.G015936.1 153 PKVKKPRK----PKENNNSAL--VRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSVYPLPMSTKR 235
                           99888888....333333333..579*************************************************************** PP

             GAGA_bind 251 rgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
                           rgaRiagrKmSqgafkk+LekLaaeGy+++np+DL+ +WA+HGtnkfvti
  HL.SW.v1.0.G015936.1 236 RGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRAYWARHGTNKFVTI 285
                           *************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.6E-1121285IPR010409GAGA-binding transcriptional activator
SMARTSM012261.4E-1711286IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDDDALNMRN WGYYEPSFKG HLGLQLMSSM AEQRDTKAFL PGRDPTTVMV SSNGTFHTNH  60
PRDCVVSDAP VPMNYVRDSW VNQRDKFLNM LPPNTNYGVL PETSGAHSLQ MLQPPEAAPR  120
DERVVGRIEE PVVNKESGPS KKRQGGGGAP KAPKVKKPRK PKENNNSALV RVKPAKKSMD  180
VVINGIDMDI SGIPIPVCSC TGTPQQCYRW GCGGWQSACC TTNVSVYPLP MSTKRRGARI  240
AGRKMSQGAF KKVLEKLAAE GYNFANPIDL RAYWARHGTN KFVTISVLSF VGCWHSSAAS  300
VMRRGIFQVA L*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867585.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD01e-111BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLW9SG760.0W9SG76_9R
STRINGVIT_01s0011g06380.t011e-150(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-106basic pentacysteine 2